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Showing results 1 to 16 of 16

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A simple construction of two-dimensional suffix trees in linear timeGo to Link

Kim, Dong Kyue; Na, Joong Chae; Sim, Jeong Seop; Park, Kunsoo

ArticleIssue Date2007CitationLecture Notes in Computer Science, v.4580 LNCS, pp 352 - 364PublisherSpringer Verlag
SCISCIESCOPUS
A space-efficient alphabet-independent Four-Russians' lookup table and a multithreaded Four-Russians' edit distance algorithmGo to Link

Kim, Youngho; Na, Joong Chae; Park, Heejin; Sim, Jeong Seop

ArticleIssue Date2016CitationTheoretical Computer Science, v.656, pp 173 - 179PublisherElsevier BV
SCOPUS
Consensus optimizing both distance sum and radiusGo to Link

Amir, Amihood; Landau, Gad M.; Na, Joong Chae; Park, Heejin; Park, Kunsoo; Sim, Jeong Seop

ArticleIssue Date2009CitationLecture Notes in Computer Science, v.5721 LNCS, pp 234 - 242PublisherSpringer Verlag
SCISCIESCOPUS
Efficient algorithms for consensus string problems minimizing both distance sum and radiusGo to Link

Amir, Amihood; Landau, Gad M.; Na, Joong Chae; Park, Heejin; Park, Kunsoo; Sim, Jeong Seop

ArticleIssue Date2011CitationTheoretical Computer Science, v.412, no.39, pp 5239 - 5246PublisherElsevier BV
SCIESCOPUS
Fast Computation of Rank and Select Functions for Succinct RepresentationGo to Link

Na, Joong Chae; Kim, Ji Eun; Park, Kunsoo; Kim, Dong Kyue

ArticleIssue Date2009CitationIEICE Transactions on Information and Systems, v.E92D, no.10, pp 2025 - 2033PublisherOxford University Press
SCISCIESCOPUS
Finding consensus and optimal alignment of circular stringsGo to Link

Lee, Taehyung; Na, Joong Chae; Park, Heejin; Park, Kunsoo; Sim, Jeong Seop

ArticleIssue Date2013CitationTheoretical Computer Science, v.468, pp 92 - 101PublisherElsevier BV
SCIESCOPUS
Finding optimal alignment and consensus of circular stringsGo to Link

Lee, Taehyung; Na, Joong Chae; Park, Heejin; Park, Kunsoo; Sim, Jeong Seop

ArticleIssue Date2010CitationLecture Notes in Computer Science, v.6129 LNCS, pp 310 - 322PublisherSpringer Verlag
SCIESCOPUS
Finding the longest common nonsuperstring in linear timeGo to Link

Na, Joong Chae; Kim, Dong Kyue; Sim, Jeong Seop

ArticleIssue Date2009CitationInformation Processing Letters, v.109, no.18, pp 1066 - 1070PublisherElsevier BV
SCIESCOPUS
FM-index of alignment with gapsGo to Link

Na, Joong Chae; Kim, Hyunjoon; Min, Seunghwan; Park, Hee jin; Lecroq, Thierry; Leonard, Martine; Mouchard, Laurent; Park, Kunsoo

ArticleIssue Date2018CitationTheoretical Computer Science, v.710, pp 148 - 157PublisherElsevier BV
SCISCIESCOPUS
FM-index of alignment with gapsGo to Link

Na, Joong Chae; Kim, Hyunjoon; Min, Seunghwan; Park, Heejin; Lecroq, Thierry; Leonard, Martine; Mouchard, Laurent; Park, Kunsoo

ArticleIssue Date2018CitationTheoretical Computer Science, v.710, pp 148 - 157PublisherElsevier BV
SCISCIESCOPUS
FM-index of alignment: A compressed index for similar stringsGo to Link

Na, Joong Chae; Kim, Hyunjoon; Park, Heejin; Lecroq, Thierry; Leonard, Martine; Mouchard, Laurent; Park, Kunsoo

ArticleIssue Date2016CitationTheoretical Computer Science, v.638, pp 159 - 170PublisherElsevier BV
SCIESCOPUS
FM-index of alignment: A compressed index for similar stringsGo to Link

Na, Joong Chae; Kim, Hyunjoon; Park, Hee jin; Lecroq, Thierry; Leonard, Martine; Mouchard, Laurent; Park, Kunsoo

ArticleIssue Date2016CitationTheoretical Computer Science, v.638, pp 159 - 170PublisherElsevier BV
SCIESCOPUS
Improving on-line construction of two-dimensional suffix trees for square matricesGo to Link

Na, Joong Chae; Kim, Namhee; Sim, Jeong Seop; Kim, Dong Kyue

ArticleIssue Date2009CitationInformation Processing Letters, v.109, no.10, pp 504 - 508PublisherElsevier BV
SCISCIESCOPUS
Linear-Time Construction of Two-Dimensional Suffix TreesGo to Link

Kim, Dong Kyue; Na, Joong Chae; Sim, Jeong Seop; Park, Kunsoo

ArticleIssue Date2011CitationAlgorithmica, v.59, no.2, pp 269 - 297PublisherSpringer Verlag
SCOPUS
Suffix array of alignment: A practical index for similar dataGo to Link

Na, Joong Chae; Park, Heejin; Lee, Sunho; Hong, Minsung; Lecroq, Thierry; Mouchard, Laurent; Park, Kunsoo

ArticleIssue Date2013CitationLecture Notes in Computer Science, v.8214 LNCS, pp 243 - 254PublisherSpringer Verlag
SCOPUS
Suffix tree of alignment: An efficient index for similar dataGo to Link

Na, Joong Chae; Park, Heejin; Crochemore, Maxime; Holub, Jan; Iliopoulos, Costas S.; Mouchard, Laurent; Park, Kunsoo

ArticleIssue Date2013CitationLecture Notes in Computer Science, v.8288 LNCS, pp 337 - 348PublisherSpringer Verlag
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