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Showing results 1 to 18 of 18

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A simple construction of two-dimensional suffix trees in linear timeGo to Link

Kim, Dong Kyue; Na, Joong Chae; Sim, Jeong Seop; Park, Kunsoo

ArticleIssue Date2007CitationLecture Notes in Computer Science, v.4580 LNCS, pp 352 - 364PublisherSpringer Verlag
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Boolean circuit programming: A new paradigm to design parallel algorithmsGo to Link

Park, Kunsoo; Park, Heejin; Jeun, Woo-Chul; Ha, Soonhoia

ArticleIssue Date2009CitationJournal of Discrete Algorithms, v.7, no.2, pp 267 - 277PublisherElsevier BV
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Consensus optimizing both distance sum and radiusGo to Link

Amir, Amihood; Landau, Gad M.; Na, Joong Chae; Park, Heejin; Park, Kunsoo; Sim, Jeong Seop

ArticleIssue Date2009CitationLecture Notes in Computer Science, v.5721 LNCS, pp 234 - 242PublisherSpringer Verlag
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Efficient algorithms for consensus string problems minimizing both distance sum and radiusGo to Link

Amir, Amihood; Landau, Gad M.; Na, Joong Chae; Park, Heejin; Park, Kunsoo; Sim, Jeong Seop

ArticleIssue Date2011CitationTheoretical Computer Science, v.412, no.39, pp 5239 - 5246PublisherElsevier BV
SCIESCOPUS
Fast Computation of Rank and Select Functions for Succinct RepresentationGo to Link

Na, Joong Chae; Kim, Ji Eun; Park, Kunsoo; Kim, Dong Kyue

ArticleIssue Date2009CitationIEICE Transactions on Information and Systems, v.E92D, no.10, pp 2025 - 2033PublisherOxford University Press
SCISCIESCOPUS
Finding consensus and optimal alignment of circular stringsGo to Link

Lee, Taehyung; Na, Joong Chae; Park, Heejin; Park, Kunsoo; Sim, Jeong Seop

ArticleIssue Date2013CitationTheoretical Computer Science, v.468, pp 92 - 101PublisherElsevier BV
SCIESCOPUS
Finding Highly Similar Regions of Genomic Sequences Through Homomorphic EncryptionGo to Link

Bataa, Magsarjav; Song, Siwoo; Park, Kunsoo; Kim, Miran; Cheon, Jung Hee; Kim, Sun

ArticleIssue Date2024CitationJournal of Computational Biology, v.31, no.3, pp 197 - 212PublisherMary Ann Liebert Inc.
SCIESCOPUS
Finding optimal alignment and consensus of circular stringsGo to Link

Lee, Taehyung; Na, Joong Chae; Park, Heejin; Park, Kunsoo; Sim, Jeong Seop

ArticleIssue Date2010CitationLecture Notes in Computer Science, v.6129 LNCS, pp 310 - 322PublisherSpringer Verlag
SCIESCOPUS
FM-index of alignment with gapsGo to Link

Na, Joong Chae; Kim, Hyunjoon; Min, Seunghwan; Park, Hee jin; Lecroq, Thierry; Leonard, Martine; Mouchard, Laurent; Park, Kunsoo

ArticleIssue Date2018CitationTheoretical Computer Science, v.710, pp 148 - 157PublisherElsevier BV
SCISCIESCOPUS
FM-index of alignment with gapsGo to Link

Na, Joong Chae; Kim, Hyunjoon; Min, Seunghwan; Park, Heejin; Lecroq, Thierry; Leonard, Martine; Mouchard, Laurent; Park, Kunsoo

ArticleIssue Date2018CitationTheoretical Computer Science, v.710, pp 148 - 157PublisherElsevier BV
SCISCIESCOPUS
FM-index of alignment: A compressed index for similar stringsGo to Link

Na, Joong Chae; Kim, Hyunjoon; Park, Heejin; Lecroq, Thierry; Leonard, Martine; Mouchard, Laurent; Park, Kunsoo

ArticleIssue Date2016CitationTheoretical Computer Science, v.638, pp 159 - 170PublisherElsevier BV
SCIESCOPUS
FM-index of alignment: A compressed index for similar stringsGo to Link

Na, Joong Chae; Kim, Hyunjoon; Park, Hee jin; Lecroq, Thierry; Leonard, Martine; Mouchard, Laurent; Park, Kunsoo

ArticleIssue Date2016CitationTheoretical Computer Science, v.638, pp 159 - 170PublisherElsevier BV
SCIESCOPUS
Isotopic peak intensity ratio based algorithm for determination of isotopic clusters and monoisotopic masses of polypeptides from high-resolution mass spectrometric dataGo to Link

Park, Kunsoo; Yoon, Joo Young; Lee, Sunho; Paek, Eunok; Park, Heejin; Jung, Hee-Jung; Lee, Sang-Won

ArticleIssue Date2008CitationAnalytical Chemistry, v.80, no.19, pp 7294 - 7303PublisherAmerican Chemical Society
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Linear-Time Construction of Two-Dimensional Suffix TreesGo to Link

Kim, Dong Kyue; Na, Joong Chae; Sim, Jeong Seop; Park, Kunsoo

ArticleIssue Date2011CitationAlgorithmica, v.59, no.2, pp 269 - 297PublisherSpringer Verlag
SCISCIESCOPUS
Monoisotopic Mass Determination Algorithm for Selenocysteine-Containing Polypeptides from Mass Spectrometric Data Based on Theoretical Modeling of Isotopic Peak Intensity RatiosGo to Link

Kim, Jin Wook; Lee, Sunho; Park, Kunsoo; Na, Seungjin; Paek, Eunok; Park, Hyung Seo; Park, Heejin; Lee, Kong-Joo; Jeong, Jaeho; Kim, Hwa-Young

ArticleIssue Date2012CitationJournal of Proteome Research, v.11, no.9, pp 4488 - 4498PublisherAmerican Chemical Society
SCOPUS
ProgRAG: Hallucination-Resistant Progressive Retrieval and Reasoning over Knowledge GraphsGo to Linkopen access

Park, Minbae; Yang, Hyemin; Kim, Jeonghyun; Park, Kunsoo; Kim, Hyunjoon

ArticleIssue Date2026CitationProceedings of the AAAI Conference on Artificial Intelligence, v.40, no.39, pp 32674 - 32682PublisherAssociation for the Advancement of Artificial Intelligence
SCOPUS
Suffix array of alignment: A practical index for similar dataGo to Link

Na, Joong Chae; Park, Heejin; Lee, Sunho; Hong, Minsung; Lecroq, Thierry; Mouchard, Laurent; Park, Kunsoo

ArticleIssue Date2013CitationLecture Notes in Computer Science, v.8214 LNCS, pp 243 - 254PublisherSpringer Verlag
SCOPUS
Suffix tree of alignment: An efficient index for similar dataGo to Link

Na, Joong Chae; Park, Heejin; Crochemore, Maxime; Holub, Jan; Iliopoulos, Costas S.; Mouchard, Laurent; Park, Kunsoo

ArticleIssue Date2013CitationLecture Notes in Computer Science, v.8288 LNCS, pp 337 - 348PublisherSpringer Verlag
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