A Proposal for the Revision of Molecular Boundary Typology
DC Field | Value | Language |
---|---|---|
dc.contributor.author | Kim, Deok-Soo | - |
dc.contributor.author | Won, Chung-In | - |
dc.contributor.author | Bhak, Jong | - |
dc.date.accessioned | 2022-12-20T11:29:45Z | - |
dc.date.available | 2022-12-20T11:29:45Z | - |
dc.date.created | 2022-08-27 | - |
dc.date.issued | 2010-10 | - |
dc.identifier.issn | 0739-1102 | - |
dc.identifier.uri | https://scholarworks.bwise.kr/hanyang/handle/2021.sw.hanyang/173630 | - |
dc.description.abstract | Molecular shape is essential in understanding molecular function, and understanding molecular shape requires definition of molecular boundaries. In this paper, we review the conceptual evolution of three molecular boundary types: the van der Waals surface. the Connolly surface, and the Lee-Richards (accessible) surface. Then, we point out the confusion among the names of these surfaces existing in the literature. Since it is desirable to have a well-defined terminology in a discipline, we propose the standard names of the three molecular boundary types and their corresponding volumes in order to maximize consistency among researchers, respect the first individual who defined or computed a surface type, and promote collaboration between biologists and geometers. | - |
dc.language | 영어 | - |
dc.language.iso | en | - |
dc.publisher | TAYLOR & FRANCIS INC | - |
dc.title | A Proposal for the Revision of Molecular Boundary Typology | - |
dc.type | Article | - |
dc.contributor.affiliatedAuthor | Kim, Deok-Soo | - |
dc.identifier.doi | 10.1080/07391102.2010.10507359 | - |
dc.identifier.scopusid | 2-s2.0-77957317681 | - |
dc.identifier.wosid | 000280567800012 | - |
dc.identifier.bibliographicCitation | JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, v.28, no.2, pp.277 - 287 | - |
dc.relation.isPartOf | JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS | - |
dc.citation.title | JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS | - |
dc.citation.volume | 28 | - |
dc.citation.number | 2 | - |
dc.citation.startPage | 277 | - |
dc.citation.endPage | 287 | - |
dc.type.rims | ART | - |
dc.type.docType | Article | - |
dc.description.journalClass | 1 | - |
dc.description.isOpenAccess | N | - |
dc.description.journalRegisteredClass | scie | - |
dc.description.journalRegisteredClass | scopus | - |
dc.relation.journalResearchArea | Biochemistry & Molecular Biology | - |
dc.relation.journalResearchArea | Biophysics | - |
dc.relation.journalWebOfScienceCategory | Biochemistry & Molecular Biology | - |
dc.relation.journalWebOfScienceCategory | Biophysics | - |
dc.subject.keywordPlus | ACCESSIBLE SURFACE-AREA | - |
dc.subject.keywordPlus | LIGAND-BINDING-SITES | - |
dc.subject.keywordPlus | FLEXIBLE DOCKING | - |
dc.subject.keywordPlus | EXCLUDED-VOLUME | - |
dc.subject.keywordPlus | DYNAMICS SIMULATIONS | - |
dc.subject.keywordPlus | OVERLAPPING SPHERES | - |
dc.subject.keywordPlus | PROTEIN STRUCTURES | - |
dc.subject.keywordPlus | ELECTRON-TRANSFER | - |
dc.subject.keywordPlus | SOLVENT | - |
dc.subject.keywordPlus | SHAPE | - |
dc.subject.keywordAuthor | van der Waals surface | - |
dc.subject.keywordAuthor | Connolly surface | - |
dc.subject.keywordAuthor | Lee-Richards surface | - |
dc.subject.keywordAuthor | Molecular surface | - |
dc.subject.keywordAuthor | Solvent-accessible surface | - |
dc.subject.keywordAuthor | Solvent-excluded surface | - |
dc.subject.keywordAuthor | Blended surface | - |
dc.subject.keywordAuthor | Offset surface | - |
dc.identifier.url | https://www.tandfonline.com/doi/abs/10.1080/07391102.2010.10507359 | - |
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