Sphericity of a protein via the beta-complex
DC Field | Value | Language |
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dc.contributor.author | Kim, Deok-Soo | - |
dc.contributor.author | Kim, Jae-Kwan | - |
dc.contributor.author | Won, Chung-In | - |
dc.contributor.author | Kim, Chong-Min | - |
dc.contributor.author | Park, Joon Young | - |
dc.contributor.author | Bhak, Jong | - |
dc.date.accessioned | 2022-12-20T18:16:19Z | - |
dc.date.available | 2022-12-20T18:16:19Z | - |
dc.date.created | 2022-08-27 | - |
dc.date.issued | 2010-04 | - |
dc.identifier.issn | 1093-3263 | - |
dc.identifier.uri | https://scholarworks.bwise.kr/hanyang/handle/2021.sw.hanyang/175174 | - |
dc.description.abstract | Molecular shape is a fundamental factor in determining the function of a molecule. As proteins tend to fold into globular shapes, the shape descriptor for protein sphericity is important in understanding molecular functions. In this paper, a definition of protein sphericity is introduced based on the recently developed geometric constructs of the beta-complex and beta-shape of a protein. The beta-complex represents the Euclidean proximity among all the atoms in a protein, and the beta-shape is the polyhedron contained within the boundary of the corresponding beta-complex. Hence, the beta-shape determines the proximity among the atoms on the boundary of a protein. Given the volume of a beta-shape, the ratio between the surface area of a sphere with this volume and the surface area of the beta-shape itself is a good measure to classify the sphericity of a protein, especially when the radius of a probe is 3.0 angstrom. The presented measure is invariant to translation and rotation. | - |
dc.language | 영어 | - |
dc.language.iso | en | - |
dc.publisher | ELSEVIER SCIENCE INC | - |
dc.title | Sphericity of a protein via the beta-complex | - |
dc.type | Article | - |
dc.contributor.affiliatedAuthor | Kim, Deok-Soo | - |
dc.identifier.doi | 10.1016/j.jmgm.2010.01.001 | - |
dc.identifier.scopusid | 2-s2.0-76549089189 | - |
dc.identifier.wosid | 000276287200006 | - |
dc.identifier.bibliographicCitation | JOURNAL OF MOLECULAR GRAPHICS & MODELLING, v.28, no.7, pp.636 - 649 | - |
dc.relation.isPartOf | JOURNAL OF MOLECULAR GRAPHICS & MODELLING | - |
dc.citation.title | JOURNAL OF MOLECULAR GRAPHICS & MODELLING | - |
dc.citation.volume | 28 | - |
dc.citation.number | 7 | - |
dc.citation.startPage | 636 | - |
dc.citation.endPage | 649 | - |
dc.type.rims | ART | - |
dc.type.docType | Article | - |
dc.description.journalClass | 1 | - |
dc.description.isOpenAccess | N | - |
dc.description.journalRegisteredClass | scie | - |
dc.description.journalRegisteredClass | scopus | - |
dc.relation.journalResearchArea | Biochemistry & Molecular Biology | - |
dc.relation.journalResearchArea | Computer Science | - |
dc.relation.journalResearchArea | Crystallography | - |
dc.relation.journalResearchArea | Mathematical & Computational Biology | - |
dc.relation.journalWebOfScienceCategory | Biochemical Research Methods | - |
dc.relation.journalWebOfScienceCategory | Biochemistry & Molecular Biology | - |
dc.relation.journalWebOfScienceCategory | Computer Science, Interdisciplinary Applications | - |
dc.relation.journalWebOfScienceCategory | Crystallography | - |
dc.relation.journalWebOfScienceCategory | Mathematical & Computational Biology | - |
dc.subject.keywordPlus | VORONOI-DIAGRAM | - |
dc.subject.keywordPlus | SURFACE-AREA | - |
dc.subject.keywordPlus | MOLECULAR-SURFACES | - |
dc.subject.keywordPlus | EXCLUDED-VOLUME | - |
dc.subject.keywordPlus | CIRCLE SET | - |
dc.subject.keywordPlus | POINT SET | - |
dc.subject.keywordPlus | COMPUTATION | - |
dc.subject.keywordPlus | EFFICIENT | - |
dc.subject.keywordPlus | SOLVENT | - |
dc.subject.keywordPlus | SPHERES | - |
dc.subject.keywordAuthor | Protein structure | - |
dc.subject.keywordAuthor | Sphericity | - |
dc.subject.keywordAuthor | Voronoi diagram | - |
dc.subject.keywordAuthor | beta-complex | - |
dc.subject.keywordAuthor | beta-shape | - |
dc.subject.keywordAuthor | PDB | - |
dc.identifier.url | https://www.sciencedirect.com/science/article/pii/S1093326310000021?via%3Dihub | - |
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