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Low-mass-ion discriminant equation (LOME) for ovarian cancer screening

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dc.contributor.authorLee, Jun Hwa-
dc.contributor.authorYoo, Byong Chul-
dc.contributor.authorKim, Yun Hwan-
dc.contributor.authorAhn, Sun-A-
dc.contributor.authorYeo, Seung-Gu-
dc.contributor.authorCho, Jae Youl-
dc.contributor.authorKim, Kyung-Hee-
dc.contributor.authorKim, Seung Cheol-
dc.date.accessioned2021-08-11T16:45:22Z-
dc.date.available2021-08-11T16:45:22Z-
dc.date.issued2016-10-12-
dc.identifier.issn1756-0381-
dc.identifier.urihttps://scholarworks.bwise.kr/sch/handle/2021.sw.sch/8678-
dc.description.abstractBackground: A low-mass-ion discriminant equation (LOME) was constructed to investigate whether systematic low-mass-ion (LMI) profiling could be applied to ovarian cancer (OVC) screening. Results: Matrix-assisted laser desorption/ionization-time of flight (MALDI-TOF) mass spectrometry was performed to obtain mass spectral data on metabolites detected as LMIs up to a mass-to-charge ratio (m/z) of 2500 for 1184 serum samples collected from healthy individuals and patients with OVC, other types of cancer, or several types of benign tumor. Principal component analysis-based discriminant analysis and two search algorithms were employed to identify discriminative low-mass ions for distinguishing OVC from non-OVC cases. OVC LOME with 13 discriminative LMIs produced excellent classification results in a validation set (sensitivity, 93. 10 %; specificity, 100.0 %). Among 13 LMIs showing differential mass intensities in OVC, 3 metabolic compounds were identified and semi-quantitated. The relative amount of LPC 16: 0 was somewhat decreased in OVC, but not significantly so. In contrast, (D,L)-glutamine and fibrinogen alpha chain fragment were significantly increased in OVC compared to the control group (p = 0.001 and 0.002, respectively). Conclusion: The present study suggested that OVC LOME might be a useful non-invasive tool with high sensitivity and specificity for OVC screening. The LOME approach could enable screening for multiple diseases, including various types of cancer, based on a single blood sample. Furthermore, the serum levels of three metabolic compounds-(D,L)-glutamine, LPC 16: 0 and fibrinogen alpha chain fragment-might facilitate screening for OVC.-
dc.language영어-
dc.language.isoENG-
dc.publisherBioMed Central-
dc.titleLow-mass-ion discriminant equation (LOME) for ovarian cancer screening-
dc.typeArticle-
dc.publisher.location영국-
dc.identifier.doi10.1186/s13040-016-0111-7-
dc.identifier.scopusid2-s2.0-84991585081-
dc.identifier.wosid000386171500001-
dc.identifier.bibliographicCitationBioData Mining, v.9-
dc.citation.titleBioData Mining-
dc.citation.volume9-
dc.type.docTypeArticle-
dc.description.isOpenAccessN-
dc.description.journalRegisteredClassscie-
dc.description.journalRegisteredClassscopus-
dc.relation.journalResearchAreaMathematical & Computational Biology-
dc.relation.journalWebOfScienceCategoryMathematical & Computational Biology-
dc.subject.keywordPlusSQUAMOUS-CELL CARCINOMA-
dc.subject.keywordPlusPOTENTIAL BIOMARKERS-
dc.subject.keywordPlusBREAST-CANCER-
dc.subject.keywordPlusGLUTAMINE-
dc.subject.keywordPlusIDENTIFICATION-
dc.subject.keywordPlusLYSOPHOSPHOLIPIDS-
dc.subject.keywordPlusMETABOLISM-
dc.subject.keywordPlusSERUM-
dc.subject.keywordAuthorOvarian cancer-
dc.subject.keywordAuthorScreening-
dc.subject.keywordAuthorSerum profiling-
dc.subject.keywordAuthorMALDI-TOF mass spectrometry-
dc.subject.keywordAuthorPattern recognition-
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