Ruegeria sediminis sp. nov., isolated from tidal flat sediment
DC Field | Value | Language |
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dc.contributor.author | Baek, Jihye | - |
dc.contributor.author | Kim, Jong-Hwa | - |
dc.contributor.author | Sukhoom, Ampaitip | - |
dc.contributor.author | Kim, Wonyong | - |
dc.date.available | 2020-08-03T07:21:00Z | - |
dc.date.issued | 2020 | - |
dc.identifier.issn | 1466-5026 | - |
dc.identifier.issn | 1466-5034 | - |
dc.identifier.uri | https://scholarworks.bwise.kr/cau/handle/2019.sw.cau/42773 | - |
dc.description.abstract | A Gram-stain-negative, aerobic, non-motile, rod-shaped bacterial strain, designated CAU 1488(T), was isolated from tidal flat sediment, and its taxonomic position was investigated using a polyphasic approach. The organism grew optimally at a temperature of 30 degrees C, at pH 7.0-7.5 and in the presence of 0-6% (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain CAU 1488(T) forms a lineage distinct from Ruegeria marisrubri ZGT 118(T) (97.9%), Ruegeria marina ZH17(T) (97.6%), Ruegeria lacuscaerulensis ITI 115(T) (97.5%), Ruegeria pomeroyi DSS-3 1 (97.1%), Ruegeria profundi ZGT108(T) (97.0%), Ruegeria intermedia CC-GIMAT-2(T) (96.8%), Ruegeria atlantica CECT 4292(T) (96.7%) and Ruegeria kandeliae J95(T) (95.9%). Genome sequencing revealed that CAU 1488(T )had a genome size of 4.23 Mbp and a G+C content of 63.2 mol%. Overall genome related indexes including average nucleotide identity and digital DNA-DNA hybridization values were 75.0-83.0% and 26.2%, which are below the cutoffs of 95 and 70%, respectively, indicating that strain CAU 1488(T) represents a distinct species from the members of the genus Ruegeria. The predominant quinone was ubiquinone-10 (Q-10). The major fatty acids were summed feature 8 (C-18:1 omega 7c/omega 6c; 60.7%) and its polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylcholine and unidentified aminolipids. On the basis of phenotypic, chemotaxonomic and genomic data, strain CAU 1488(T) constitutes a novel species of the genus Ruegeria, for which the name Ruegeria sediminis sp. nov. is proposed. The type strain is CAU 1488(T) (=KCTC 62996(T) =NBRC 113693(T)). | - |
dc.format.extent | 7 | - |
dc.language | 영어 | - |
dc.language.iso | ENG | - |
dc.publisher | MICROBIOLOGY SOC | - |
dc.title | Ruegeria sediminis sp. nov., isolated from tidal flat sediment | - |
dc.type | Article | - |
dc.identifier.doi | 10.1099/ijsem.0.004128 | - |
dc.identifier.bibliographicCitation | INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, v.70, no.5, pp 3055 - 3061 | - |
dc.description.isOpenAccess | N | - |
dc.identifier.wosid | 000537392000011 | - |
dc.identifier.scopusid | 2-s2.0-85085630816 | - |
dc.citation.endPage | 3061 | - |
dc.citation.number | 5 | - |
dc.citation.startPage | 3055 | - |
dc.citation.title | INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY | - |
dc.citation.volume | 70 | - |
dc.type.docType | Article | - |
dc.publisher.location | 영국 | - |
dc.subject.keywordAuthor | Ruegeria sediminis | - |
dc.subject.keywordAuthor | Rhodobacteraceae | - |
dc.subject.keywordAuthor | Proteobacteria | - |
dc.subject.keywordAuthor | tidal flat | - |
dc.subject.keywordPlus | GEN. NOV. | - |
dc.subject.keywordPlus | SILICIBACTER | - |
dc.subject.keywordPlus | BACTERIA | - |
dc.relation.journalResearchArea | Microbiology | - |
dc.relation.journalWebOfScienceCategory | Microbiology | - |
dc.description.journalRegisteredClass | scie | - |
dc.description.journalRegisteredClass | scopus | - |
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