Identification of the genome sequence of Zostera associated varicosavirus 1, a novel negative-sense RNA virus, in the common eelgrass (Zostera marina) transcriptome
DC Field | Value | Language |
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dc.contributor.author | Shin, Chaerim | - |
dc.contributor.author | Choi, Dongjin | - |
dc.contributor.author | Hahn, Yoonsoo | - |
dc.date.accessioned | 2022-02-17T02:42:28Z | - |
dc.date.available | 2022-02-17T02:42:28Z | - |
dc.date.issued | 2021-08 | - |
dc.identifier.issn | 0001-723X | - |
dc.identifier.issn | 1336-2305 | - |
dc.identifier.uri | https://scholarworks.bwise.kr/cau/handle/2019.sw.cau/55090 | - |
dc.description.abstract | Varicosaviruses (the genus Varicosavirus) are bipartite, negative-sense, single-stranded RNA viruses that infect plants. We analyzed a transcriptome dataset isolated from the common eelgrass (Zostera marina) and identified a novel varicosavirus named Zostera associated varicosavirus 1 (ZaVV1). The ZaVV1 genome consists of two genomic segments: RNA1 (6,632-nt) has an open reading frame (ORF) encoding a large multi-functional polymerase protein (L), while RNA2 (4,304-nt) has four ORFs: one for a nucleocapsid protein and three for proteins with unknown functions (P2, P3, and P4). Sequence comparison and phylogenetic analysis using L proteins showed that ZaVV1 is a novel member of the genus Varicosavirus of the family Rhabdoviridae. The conserved regulatory elements involved in transcription termination/polyadenylation and transcription initiation were identified in the ZaVV1 gene-junction regions with the consensus sequence 3'-UAUUAUUCUUUUUGCUCU-5' (in the negative-sense genome). The ZaVV1 genome sequence may be useful for studying the phylogenetic relationships of varicosaviruses and genome evolution of rhabdoviruses. | - |
dc.format.extent | 8 | - |
dc.language | 영어 | - |
dc.language.iso | ENG | - |
dc.publisher | AEPRESS SRO | - |
dc.title | Identification of the genome sequence of Zostera associated varicosavirus 1, a novel negative-sense RNA virus, in the common eelgrass (Zostera marina) transcriptome | - |
dc.type | Article | - |
dc.identifier.doi | 10.4149/av_2021_404 | - |
dc.identifier.bibliographicCitation | ACTA VIROLOGICA, v.65, no.4, pp 373 - 380 | - |
dc.description.isOpenAccess | Y | - |
dc.identifier.wosid | 000746041600005 | - |
dc.identifier.scopusid | 2-s2.0-85123389655 | - |
dc.citation.endPage | 380 | - |
dc.citation.number | 4 | - |
dc.citation.startPage | 373 | - |
dc.citation.title | ACTA VIROLOGICA | - |
dc.citation.volume | 65 | - |
dc.type.docType | Article | - |
dc.publisher.location | 슬로바키아 | - |
dc.subject.keywordAuthor | Zostera associated varicosavirus 1 | - |
dc.subject.keywordAuthor | Varicosavirus | - |
dc.subject.keywordAuthor | Rhabdoviridae | - |
dc.subject.keywordAuthor | common eelgrass | - |
dc.subject.keywordAuthor | Zostera marina | - |
dc.subject.keywordPlus | BIG-VEIN-VIRUS | - |
dc.subject.keywordPlus | FAMILY BETAFLEXIVIRIDAE | - |
dc.subject.keywordPlus | NUCLEOTIDE-SEQUENCE | - |
dc.subject.keywordPlus | PLANT | - |
dc.subject.keywordPlus | GENUS | - |
dc.subject.keywordPlus | RHABDOVIRIDAE | - |
dc.subject.keywordPlus | BIPARTITE | - |
dc.subject.keywordPlus | MEMBER | - |
dc.relation.journalResearchArea | Virology | - |
dc.relation.journalWebOfScienceCategory | Virology | - |
dc.description.journalRegisteredClass | scie | - |
dc.description.journalRegisteredClass | scopus | - |
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