연체동물 NGS 데이터 분석을 위한 PANM 데이터베이스 업데이트 (Version II)The Protostome database (PANM-DB): Version 2.0 release with updated sequences
- Other Titles
- The Protostome database (PANM-DB): Version 2.0 release with updated sequences
- Authors
- 강세원; 박소영; 패트나익; 황희주; 정종민; 송대권; 박영수; 이준상; 한연수; 박홍석; 이용석
- Issue Date
- 2016
- Publisher
- 한국패류학회
- Keywords
- PANM-DB; Arthropoda; Nematoda; Mollusks; Cephalopoda
- Citation
- The Korean Journal of Malacology, v.32, no.3, pp.185 - 188
- Journal Title
- The Korean Journal of Malacology
- Volume
- 32
- Number
- 3
- Start Page
- 185
- End Page
- 188
- URI
- https://scholarworks.bwise.kr/sch/handle/2021.sw.sch/9657
- ISSN
- 1225-3480
- Abstract
- PANM-DB (version 1.0) was constructed as a web-based interface for the analysis and annotation of Next-Generation Sequencing (NGS) data of Mollusca, Arthropoda, and Nematoda. The database collected the sequences of Protostomes (Mollusca, Arthropoda, and Nematoda) from the NCBI Taxonomy Browser, and the same were compiled in a multi-FASTA format and stored using the formatdb program. This improved the processing of the RNA-seq sequences in terms of speed and hit percentage. PANM-DB has been successfully used for the transcriptome annotation of butterfly, land snail, and other commercial mollusca. We have improved the database by updating the same with new sequences and version 2.0 contains a total of 7,571,246 protein sequences (two times more as compared to version 1.0). Furthermore, the updated version contains the Cephalopoda database. The constructed web interface is available that independently analyses following these updates that is an improvement of the mollusks BLAST server. The updated version of PANM-DB will be helpful for the analysis of the NGS based sequencing data of non-model species, especially Mollusca, Arthropoda, Nematoda. (http://malacol.or.kr/blast/PANM.html)
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