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Transfer Matrix Algorithm for Computing the Geometric Quantities of a Square Lattice Polymer

Authors
Lee, Julian
Issue Date
Dec-2018
Publisher
KOREAN PHYSICAL SOC
Keywords
Lattice polymer; Transfer matrix; Exact enumeration; Interacting self-avoiding walk
Citation
JOURNAL OF THE KOREAN PHYSICAL SOCIETY, v.73, no.12, pp.1808 - 1813
Journal Title
JOURNAL OF THE KOREAN PHYSICAL SOCIETY
Volume
73
Number
12
Start Page
1808
End Page
1813
URI
http://scholarworks.bwise.kr/ssu/handle/2018.sw.ssu/30886
DOI
10.3938/jkps.73.1808
ISSN
0374-4884
Abstract
I develop a transfer matrix algorithm for computing the geometric quantities of a square lattice polymer with nearest-neighbor interactions. The radius of gyration, the end-to-end distance, and the monomer-to-end distance were computed as functions of the temperature. The computation time scales as less than or similar to 1.8(N) with a chain length N, in contrast to the explicit enumeration where the scaling is similar to 2.7(N). Various techniques for reducing memory requirements are implemented.
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Lee, Ju lian
College of Natural Sciences (Department of Bioinformatics & Life Science)
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