Raman spectroscopy and density functional theory study of energetically closely separated C-2'-endo and C-3'-endo pentose forms in purine nucleoside analogue drug-gold conjugates

Abstract

We performed a vibrational analysis of a cyclin-dependent kinase inhibitor as an anticancer drug using Raman spectroscopy and quantum mechanical calculations. BMK-Y101, a purine nucleoside analogue cyclin-dependent kinase inhibitor, was found to adsorb on gold nanoparticles as evidenced by ultraviolet-visible absorption spectroscopy. Density functional theory (DFT) calculations were introduced to examine the energetic stabilities of the tautomeric amino and imino purine rings as well as C-3-endo and C-2-endo pentose forms for the possible binding geometries to 6-atom gold clusters. DFT calculations predicted that the N-9 binding mode of the C-2-endo amino purine conformer would be the most stable in coordination with the gold atoms, despite very small energy differences of 0.026kcal/mol to the second stable conformer of the N-1 coordinated state. Surface-enhanced Raman scattering (SERS) spectra were analyzed with appropriate vibrational assignments according to the DFT calculations and potential energy distribution analysis. The vibrational band at similar to 1,460cm(-1), which can be ascribed to the (N-9-C-4)(20%)+(N-3-C-4)(13%)+(C-10-C-7)(12%)+(C-7-C-8)(12%)+(N-3-C-2)(11%) mode for the N-9-coordination on Au-6, appeared to be the most prominent in the SERS spectra, as predicted from the DFT calculations. BMK-Y101 appeared to be detached from gold nanoparticles efficiently not in cell culture media but in hepatocarcinoma cells. Our findings indicate that quantum mechanical DFT calculations can be successfully implemented to interpret the SERS spectral features of the nucleoside drug on Au surfaces.