Pseudorivibacter rhizosphaerae gen. Nov., sp. nov., isolated from rhizosphere soil of camellia sinensis (l.) o. ktze and emended description of the genus rivibacter
DC Field | Value | Language |
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dc.contributor.author | Zhou, Xing-Kui | - |
dc.contributor.author | Li, Qing-Qing | - |
dc.contributor.author | Dong, Li-Min | - |
dc.contributor.author | Yang, Deng-Qiang | - |
dc.contributor.author | Liu, Lan | - |
dc.contributor.author | Fang, Bao-Zhu | - |
dc.contributor.author | Jeon, Che Ok | - |
dc.contributor.author | Li, Wen-Jun | - |
dc.contributor.author | Duan, Yan-Qing | - |
dc.date.available | 2020-04-14T02:20:39Z | - |
dc.date.issued | 2020 | - |
dc.identifier.issn | 1466-5026 | - |
dc.identifier.issn | 1466-5034 | - |
dc.identifier.uri | https://scholarworks.bwise.kr/cau/handle/2019.sw.cau/38340 | - |
dc.description.abstract | A Gram-stain-negative, facultative anaerobic, motile and straight rod-shaped bacterium, designated strain C1-9T, was isolated from rhizosphere soil of Camellia sinensis (L.) O. Ktze collected from a tea garden in Huize, south-western PR China. Cells were oxidase-positive and catalase-negative. Growth occurred at 20–40 °C and pH 6.0–10.0, with an optimal growth at 30 °C and pH 7.0. The respiratory quinone was detected as ubiquinone-8 (Q-8). The major fatty acids were identified as summed feature 3 (C16:1 ω7c and/or C16:1 ω6c), C16:0 and summed feature 8 (C18:1 ω7c or C18:1 ω6c). The cellular polar lipids contained phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, three unidentified phospholipids, two unidentified lipids, one unidentified aminophospholipid and one unidentified aminolipid. The polyamine types were detected as 1,8-diaminooctane and 2-hydroxyputrescine. The genomic DNA G+C content was 68.6 mol%. Based on the results of 16S rRNA gene sequence analysis, strain C1-9T (MF687442) showed highest sequence similarity to Rivibacter subsaxonicus DSM 19570T (97.1%). The phylogenetic tree based on 16S rRNA gene sequences showed that strain C1-9T clustered close to R. subsaxonicus DSM 19570T, Methylibium petroleiphilum CCTCC AB 2014193T and species belonging to the genera Rhizobacter and Piscinibacter. The phylogenomic tree indicated that strain C1-9T formed a clade with R. subsaxonicus. The average nucleotide identity value was 76.0% between strain C1-9T and R. subsaxonicus DSM 19570T, which is lower than the prokaryotic species delineation threshold of 95.0–96.0%. The polyphasic taxonomic characteristics indicated that strain C1-9T represents a novel species of a new genus within the order Burkholderiales, for which the name Pseudorivibacter rhizosphaerae gen. nov., sp. nov. (type strain C1-9T = KCTC 62325T=CGMCC 1.13864T) is proposed. © 2020 Sun Yat-Sen University, PR China. | - |
dc.format.extent | 8 | - |
dc.language | 영어 | - |
dc.language.iso | ENG | - |
dc.publisher | Microbiology Society | - |
dc.title | Pseudorivibacter rhizosphaerae gen. Nov., sp. nov., isolated from rhizosphere soil of camellia sinensis (l.) o. ktze and emended description of the genus rivibacter | - |
dc.type | Article | - |
dc.identifier.doi | 10.1099/ijsem.0.003878 | - |
dc.identifier.bibliographicCitation | International Journal of Systematic and Evolutionary Microbiology, v.70, no.2, pp 1071 - 1078 | - |
dc.description.isOpenAccess | N | - |
dc.identifier.wosid | 000522888400053 | - |
dc.identifier.scopusid | 2-s2.0-85081131831 | - |
dc.citation.endPage | 1078 | - |
dc.citation.number | 2 | - |
dc.citation.startPage | 1071 | - |
dc.citation.title | International Journal of Systematic and Evolutionary Microbiology | - |
dc.citation.volume | 70 | - |
dc.type.docType | Article | - |
dc.publisher.location | 영국 | - |
dc.subject.keywordAuthor | Camellia sinensis (L.) O | - |
dc.subject.keywordAuthor | Ktze | - |
dc.subject.keywordAuthor | Nov | - |
dc.subject.keywordAuthor | Phylogenomic tree | - |
dc.subject.keywordAuthor | Polyhasic taxonomy | - |
dc.subject.keywordAuthor | Pseudorivibacter rhizosphaerae sp | - |
dc.subject.keywordPlus | bacterial DNA | - |
dc.subject.keywordPlus | fatty acid | - |
dc.subject.keywordPlus | phospholipid | - |
dc.subject.keywordPlus | RNA 16S | - |
dc.subject.keywordPlus | ubiquinone | - |
dc.subject.keywordPlus | ubiquinone 8 | - |
dc.subject.keywordPlus | bacterium identification | - |
dc.subject.keywordPlus | Burkholderiales | - |
dc.subject.keywordPlus | Camellia sinensis | - |
dc.subject.keywordPlus | chemistry | - |
dc.subject.keywordPlus | China | - |
dc.subject.keywordPlus | classification | - |
dc.subject.keywordPlus | DNA base composition | - |
dc.subject.keywordPlus | DNA sequence | - |
dc.subject.keywordPlus | genetics | - |
dc.subject.keywordPlus | isolation and purification | - |
dc.subject.keywordPlus | microbiology | - |
dc.subject.keywordPlus | nucleic acid hybridization | - |
dc.subject.keywordPlus | phylogeny | - |
dc.subject.keywordPlus | rhizosphere | - |
dc.subject.keywordPlus | Bacterial Typing Techniques | - |
dc.subject.keywordPlus | Base Composition | - |
dc.subject.keywordPlus | Burkholderiales | - |
dc.subject.keywordPlus | Camellia sinensis | - |
dc.subject.keywordPlus | China | - |
dc.subject.keywordPlus | DNA, Bacterial | - |
dc.subject.keywordPlus | Fatty Acids | - |
dc.subject.keywordPlus | Nucleic Acid Hybridization | - |
dc.subject.keywordPlus | Phospholipids | - |
dc.subject.keywordPlus | Phylogeny | - |
dc.subject.keywordPlus | Rhizosphere | - |
dc.subject.keywordPlus | RNA, Ribosomal, 16S | - |
dc.subject.keywordPlus | Sequence Analysis, DNA | - |
dc.subject.keywordPlus | Soil Microbiology | - |
dc.subject.keywordPlus | Ubiquinone | - |
dc.relation.journalResearchArea | Microbiology | - |
dc.relation.journalWebOfScienceCategory | Microbiology | - |
dc.description.journalRegisteredClass | scie | - |
dc.description.journalRegisteredClass | scopus | - |
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