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NoRSE: noise reduction and state evaluator for high-frequency single event traces

Authors
Reuel, Nigel F.Bojo, PeterZhang, JingqingBoghossian, Ardemis A.Ahn, Jin-HoKim, Jong-HoStrano, Michael S.
Issue Date
Jan-2012
Publisher
Oxford University Press
Keywords
FLUORESCENCE; WALLED CARBON NANOTUBES
Citation
Bioinformatics, v.28, no.2, pp.296 - 297
Indexed
SCIE
SCOPUS
Journal Title
Bioinformatics
Volume
28
Number
2
Start Page
296
End Page
297
URI
https://scholarworks.bwise.kr/erica/handle/2021.sw.erica/33888
DOI
10.1093/bioinformatics/btr632
ISSN
1367-4803
Abstract
NoRSE was developed to analyze high-frequency datasets collected from multistate, dynamic experiments, such as molecular adsorption and desorption onto carbon nanotubes. As technology improves sampling frequency, these stochastic datasets become increasingly large with faster dynamic events. More efficient algorithms are needed to accurately locate the unique states in each time trace. NoRSE adapts and optimizes a previously published noise reduction algorithm and uses a custom peak flagging routine to rapidly identify unique event states. The algorithm is explained using experimental data from our lab and its fitting accuracy and efficiency are then shown with a generalized model of stochastic datasets. The algorithm is compared to another recently published state finding algorithm and is found to be 27 times faster and more accurate over 55% of the generalized experimental space. NoRSE is written as an M-file for Matlab.
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ERICA 공학대학 (ERICA 배터리소재화학공학과)
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