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A general parallelization approach to improve computation efficiency in a global chemical transport model (GEOS-Chem)open access

Authors
Park, Rokjin J.Youn, DaeokYoo, Sung HoonHan, Dong SeokKang, Boo JoongIm, Eul Gyu
Issue Date
Dec-2010
Publisher
GEOCHEMICAL SOC JAPAN
Keywords
MPI; OpenMP; parallelization; GEOS-Chem; modeling performance
Citation
GEOCHEMICAL JOURNAL, v.44, no.4, pp.323 - 329
Indexed
SCIE
SCOPUS
Journal Title
GEOCHEMICAL JOURNAL
Volume
44
Number
4
Start Page
323
End Page
329
URI
https://scholarworks.bwise.kr/hanyang/handle/2021.sw.hanyang/173355
DOI
10.2343/geochemj.1.0071
ISSN
0016-7002
Abstract
Despite increasing processing power of systems, sequential programs have limitations to achieve corresponding performance gains. Parallelization of sequential programs can exploit the computation potential to reduce overall execution expenditures. However, parallelization of a very, large legacy program arises great challenges, because 1) former design of the program did not consider parallelization, 2) the large-scale program has been developed for long time even decades, and 3) some developers of the program are no longer available. In the atmospheric science field, there are many such legacy programs and GEOS-Chem model developed in Harvard University is one of examples. In this paper, we suggest simple procedures of the MPI parallelization which can be easily applied to a large legacy program. We applied this method to the GEOS-Chem model which is already parallelized with the OpenMP method alone. Our test results showed that the good performance improvement can be obtained by parallelizing a small portion of the program.
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